# Data and Software at AIND

[![Software Overview](_static/aind-software-overview.png)](_static/aind-software-overview.pdf)

## I want to...

[Acquire, upload & process](acquire_upload/index.md) data in the Cloud.

[Explore, QC & analyze](explore_analyze/index.md) my data assets.

[Propose a project](aind/project_proposals.md) with data and software support.

[Developer templates](policies_practices/developer_templates.md) for new packages and tools.

## I need to report an...

[Issue with scientific computing software](https://github.com/AllenNeuralDynamics/aind-scientific-computing/issues).

[Issue with SIPE instrumentation](https://apps.powerapps.com/play/e/9084dabc-d707-e1bf-8113-685be25cac15/a/cb338490-e23d-48e6-9e6d-e600b8d17dd4?tenantId=32669cd6-737f-4b39-8bdd-d6951120d3fc&hidenavbar=true&skipmetadata=true).

## I need an account...

Follow these links to request access to:

- [Code Ocean](https://app.smartsheet.com/b/form/547ea100949646979f978fab97075523)
- [Hortacloud](https://app.smartsheet.com/b/form/590de81306714959be7a7499b361fc04)
- [AllenNeuralDynamics GitHub](https://alleninstitute.service-now.com/sp?id=sc_cat_item&sys_id=83bc1726477aa91032b789b5536d430e&referrer=popular_items) - via ServiceNow, ask for access to the AllenNeuralDynamics GitHub organization
- [GitHub Copilot](https://alleninstitute.service-now.com/sp?id=sc_cat_item&sys_id=83bc1726477aa91032b789b5536d430e&referrer=popular_items) - via ServiceNow
- [VAST /allen/aind/scratch and /allen/aind/stage](https://alleninstitute.service-now.com/sp?id=sc_cat_item&sys_id=83bc1726477aa91032b789b5536d430e&referrer=popular_items) - via ServiceNow

## I want to learn about...

[Data organization](policies_practices/data_organization.md), [data governance](policies_practices/data_governance.md), and [software practices](policies_practices/software_practices.md) at AIND.

```{toctree}
:maxdepth: 1
:hidden:
:caption: Acquire, upload & process

acquire_upload/prepare_before_acquisition
acquire_upload/acquire_data
acquire_upload/calibration
acquire_upload/upload_data
acquire_upload/process_data

```

```{toctree}
:maxdepth: 1
:hidden:
:caption: Explore, QC & analyze

explore_analyze/quality_control
explore_analyze/find_data
explore_analyze/analyze_data
explore_analyze/outreach


```

```{toctree}
:maxdepth: 1
:hidden:
:caption: Policies & practices

policies_practices/data_organization.md
policies_practices/data_governance.md

policies_practices/software_practices.md
policies_practices/platform_support.md
policies_practices/docs
policies_practices/developer_templates

```

```{toctree}
:maxdepth: 1
:hidden:
:caption: AIND Resources

aind/core_services
aind/project_proposals.md
aind/teams.md

```